HDgraphiX - Vahidi Lab

HDgraphiX


DynamX Cluster: HDExaminer:

Font Choices:









Type of Plot:



**More Info**



Choose Bounds/Colours Input Type:






The data range will be determined by the maximum absolute value in the provided data, with 7 shades of colours.



Click Here for Advanced Options

Select boxes next to desired Advanced Options

How to use Change Bounds (hover over me!)

Change Bounds:

Global Maximum:

How to use the Drop Times Option

Drop Times:

How to use the Drop Peptides Option

Drop Peptides:
Protein Name: ............... Start Residue: ............... End Residue:

How to use the Drop Proteins Option

Drop Proteins:

How to use Renumbering

Renumber Residues: Number of Proteins to Renumber:
Protein: ......................... Value:

How to use Domain Labelling

Labelling Domains:
Domain Name: .............. Start Peptide: ................ End Peptide: ................. Colour:






Colour Insignificant Values (Not White):

**More Info**



Separate Heatmap Plots:

**More Info**



All Time Labels in One Unit:

**More Info**



Change Title Padding: Title: Subtitles:

**More Info**



Change Default Colouring:

**More Info**
Change Neutral Cell Colour (White Cells):
Change Colour for Cells Lacking Data:
Please input colours as hexidecimal values beginning with a pound sign

Heatmap Cell Dividing Colour/Thickness: Colour: Thickness:

**More Info**


Change State Comparison Separating Line: Colour: Thickness:

**More Info**


Change Heatmap Border: Colour: Thickness:

**More Info**


Change Heatmap Ticks: Tick Colour: Label Colour: Width: Length:

**More Info**


Add Cell Values to Heatmap:

For Woods Plots; Colour Gradient According to Heatmap:

**More Info**


For Woods Plots;.. Set Colour Cutoff Value:

**More Info**


For Woods Plots;.. Set Plot Dimensions (inches): Width: Height:
For Woods Plots;.. Set Colours: Negative: Near Zero: Positive:

**More Info**


For Woods Plots;.. Remove Horizontal Threshold Markers:

**More Info**


For Woods Plots;.. Change Peptide Thickness: Colour Thickness: Border Thickness:

**More Info**




For Volcano Plotss; Set Alternate Point Colour:

**More Info**



Input DPI for image:

**More Info**



Generate PDF rather than PNG:

**More Info**




Select if you wish to download PyMOL colouring scripts:

**More Info**




Please acknowledge Kent Vosper, Algirdas Velyvis, and Siavash Vahidi of the University of Guelph.
https://www.vahidilab.ca/
Please direct questions/input to kvosper@uoguelph.ca